Have you read this? http://connect.lulu.com/en/discussion/33675/how-do-i-make-my-content-stretch-all-the-way-to-the-edge-of-the-page-full-bleed-indesign#latest
What it boils down to, no matter what you create your file of pages in, is that you have to add a little extra to the 'standard' size you are using, in your case 6x9. Have a read at that because it gives those extra measurements and more handy details also.
I'm using the template provided. I know how to make pdf's with bleeds. The Content Creation Wizard says I must upload a 6x9 file and it resizes any file with bleeds. Help?